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A compilation and categorization of next-generation sequencing resources

Novoalign

Tool nameNovoalign
URLhttp://www.novocraft.com/main/index.php
Important features1. Alignment tool for aligning short sequences against an indexed set of reference sequences. 2. Aligning Illumina single-end and paired-end reads. 3. Gapped alignment on single-end reads and paired-end reads 4. Single pass alignment for Bisulphite treated DNA.
Citations
Year of publicationNot available
Rank by usage frequency100
Comments
FunctionRNA seq alignment, ChIP seq analysis
CategoryDownloadable
License
Status
Input file formatFASTA, FASTQ
Output file formatSAM and native output formats
Operating systemLinux/Unix 32/64bit
Operating languageC++
PlatformIllumina/Solexa, ABI SOLiD
Maintained byNovocraft Technologies Sdn. Bhd. Kuala Lumpur, Malaysia
Downloadable file format
Submission file format

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